Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs1376352 chr7:33704994 C/T 1.18E-7 176 25.17 25.43 19.87 KM Plot
PCPG rs137909390 chr12:124078791 C/A 4.47E-5 176 25.87 19.87 20.13 KM Plot
PCPG rs137919480 chr2:24320649 A/G 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs137970130 chr2:240712859 C/A 5.78E-9 172 26.92 23.83 6.25 KM Plot
PCPG rs1380659 chr2:107223010 T/C 0.000257 174 26.57 23.88 25.87 KM Plot
PCPG rs138155346 chr12:56672106 T/A 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs138159896 chr7:105164522 G/A 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs138185775 chr7:105161684 GGGGA/G 5.57E-5 176 20.28 30.45 2.28 KM Plot
PCPG rs138231311 chr10:29853946 T/TCTTG 5.6E-11 176 25.67 17.52 10.3 KM Plot
PCPG rs138372213 chr16:90083699 C/G 1.14E-8 174 25.87 20.2 6.62 KM Plot
PCPG rs138376836 chr16:89943323 C/T 0.000194 174 25.87 20.17 36.37 KM Plot
PCPG rs138413549 chr3:136665508 TTGGATGCAATGTGTAA/T 0.000469 177 22.15 27.33 23.03 KM Plot
PCPG rs13842 chr12:6572561 A/T 0.000263 174 19.3 25.97 25.77 KM Plot
PCPG rs138422788 chr2:24322310 C/T 0.000122 175 25.4 27.52 17.43 KM Plot
PCPG rs138462423 chr2:24319433 CA/C 0.000114 177 25.4 26.92 17.43 KM Plot